Causality

Casual Structural Modeling of Survey Questionnaires via a Bootstrapped Ordinal Bayesian Network Approach

Bootstrapped ordinal Bayesian network for survey questionnaires.

Directed Cyclic Graphs for Simultaneous Discovery of Time-Lagged and Instantaneous Causality from Time-Series Data

Causal Discovery for Time-Series Data.

Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data

Functional directed cyclic graphs.

Functional Bayesian Networks for Discovering Causality from Multivariate Functional Data

Functional causal discovery.

Individualized Causal Discovery with Latent Trajectory Embedded Bayesian Networks

Individualized causal discovery.

Model-Based Causal Discovery for Zero-Inflated Count Data

Zero-inflated generalized hypergeometric Bayesian networks.

Individualized Inference in Bayesian Quantile Directed Acyclic Graphical Models

Graphical Dirichlet process.

Bivariate Causal Discovery for Categorical Data via Classification with Optimal Label Permutation

Discover causality from observation categorical data.

Causal Discovery with Heterogeneous Observational Data

Discover causality from heterogeneous continuous observational data with directed cyclic graphs.

Ordinal Causal Discovery

Discover causality from observation ordinal categorical data with ordinal Bayesian networks.

Rejoinder to the Discussion of "Bayesian Graphical Models for Modern Biological Applications."

A review of Bayesian graphical models for biological applications.

Bayesian Graphical Models for Modern Biological Applications

A review of Bayesian graphical models for biological applications.

Bayesian Causal Structural Learning with Zero-Inflated Poisson Bayesian Networks

Zero-inflated Poisson Bayesian networks.

Polygenic Prediction via Bayesian Regression and Continuous Shrinkage Priors

A novel polygenic prediction method that infers posterior SNP effect sizes using GWAS summary statistics and an external LD reference panel.

Bayesian Graphical Regression

A new directed acyclic graphical model that produces subject-specific and predictive graphs with theoretical guarantee.

Heterogeneous Reciprocal Graphical Models

A hierarchical reciprocal graphical models to infer gene networks from heterogeneous data with or without known groups.

Reciprocal Graphical Models for Integrative Gene Regulatory Network Analysis

A Gaussian reciprocal graphical model for inference about gene regulatory relationships by integrating mRNA gene expression and DNA level information including copy number and methylation.

Bayesian Graphical Models for Computational Network Biology

A review of directed, undirected, and reciprocal graphs.

Sparse Multi-Dimensional Graphical Models: A Unified Bayesian Framework

An array-variate directed acyclic graphical model for tensor data.

Bayesian Approaches for Large Biological Networks

Bayesian methods have found many successful applications in high-throughput genomics. We focus on approaches for network-based inference from gene expression data. Methods that employ sparse priors have been particularly successful, as they are …

Bayesian Nonlinear Model Selection for Gene Regulatory Networks

A Bayesian directed acyclic graphical model to recover the structure of nonlinear gene regulatory networks.

Integrative Bayesian Network Analysis of Genomic Data

An integrative Bayesian network approach to investigate the relationships between genetic and epigenetic alterations as well as how these mutations affect a patient’s clinical outcome.