Tumor Heterogeneity

Consensus Monte Carlo for Random Subsets using Shared Anchors

Consensus Monte Carlo algorithm for DP and IBP

Parallel-Tempered Feature Allocation for Large-Scale Tumor Heterogeneity with Deep Sequencing Data

We develop a parallel-tempered feature allocation algorithm to infer tumor heterogeneity from deep DNA sequencing data. The feature allocation model is based on a binomial likelihood and an Indian Buffet process prior on the latent haplotypes. A …